Jack Wadden

This change refactors the double for loop typical of dynamic programming to save values across loops preventing unnecessary matrix accesses. In my testing, this improved swalign "align" performance by about...

Simple bugfix. batch_format argument was not being properly passed to generate_output_from_results here resulting in batch_format being forced to True regardless of --batch_format flag. This causes interoperability issues when preparing datasets...

Some ANMLZoo applications (outlined in ERRATA) do not compile to fit within a single AP chip. These apps need to be adjusted and recompiled for an updated release.

ANMLZoo should have more input files to support algorithms that require training and testing phases.

Profiling stores behavior in memory and does not write these structures to disk until simulation is finished. This can prevent profiling of longer runs due to memory limitations.

Need new methodology for special element simulation.

VASim needs minor refactoring

1

There is a lot of commented out "dead" code in VASim. There is also a lot of "method2()" left over from lazy feature addition and debug cycles. VASim needs a...

VASim does not allow input stream parallelization by multiple files, delimeters, or byte width; There is also no way to specify overlap among streams.