jackievaleri

icon indicating a website link jackievaleri.github.io icon indicating an email [email protected]

icon company @modernatx icon location Cambridge, MA icon location Data Scientist at Moderna. Previously PhD student at MIT Dept. of Biological Engineering. Pronouns: she/her

Results 3 issues of jackievaleri

Manual installation of PyQt5, matplotlib, seaborn

1 comment

I needed to pip install PyQt5, matplotlib, and seaborn before using - not an issue for me, but it may be beneficial to update the documentation.

early_stop not being triggered?

Hello, I have tried to train DNABERT models with early_stop = 1 and early_stop = 5 but both times my training log looks like below. It seems the early_stop condition...

Changing max_seq_length does not update max_length in config.json

I was wondering if this behavior is intended. For instance when I run run_finetune.py with the following code: `python run_finetune.py --model_type dna --tokenizer_name=dna$KMER --model_name_or_path $MODEL_PATH --task_name dnaprom --do_train --data_dir $DATA_PATH...