João André Carriço

Watching this as well! Looking forward for it!

Hi Shaun Thanks for the suggestions. In those cases for multiple read input we will probably have to create specific FlowCraft module for those use cases. For the `integrity_coverage` to...

@sjackman I agree with your assessment but for our use cases, I don’t think I ever used an interleaved fastq file since I started working with microbial ngs data. I...

What is the difference between self.parms and self.extraparms? it is not clear too me why we would need a different attribute instead of just adding any additional parameters .

@stefcardinale are you running it in a cluster or a single server ? From your pot I suspect it is a single server. I am asking to see how this...

I don't think this is an issue due to the run time of trimmomatic and it was only reported for docker on mac. The fix basically redirected the trimmomatic's log...

@ODiogoSilva I agree to keep it separate because the user might want the option not to send results data for a webservice. It returns the inspect link with the button...

Looks a good compromise.

Just a quick note that we are working on this and this issue is not forgotten There is always a question of allele calling and the database that is being...

Hello Jonas that is indeed the problem. The allele classification needs to be queue and our efforts has been in parallelising the allele sequence extraction first and then create a...