Isaac Virshup

I'd go for `conda-forge`. We've got scanpy, anndata, and scvi-tools in there, so there more knowledge of the CI system in scverse. Also if you go bioconda, but all your...

> I'm working on a [plugin for Napari](https://github.com/jo-mueller/napari-spatial-statistics) to make spatial statistics available to the user base there. It's not yet released, though. This sounds cool! I would also like...

Are you looking for more functionality than you'd get from: ```python sc.metrics.morans_i(dataset, use_graph="adjacency_matrix", obsm="X") ```

What API are you thinking here? `cmap` should already support alpha levels. I'm not sure how the data is encoded in this example (e.g. how is the alpha channel coded...

That works! I'm not too fussed with where it lives. I could be convinced either way – but using it from the tutorials for muon would definitely aid in visibility....

Great, thanks for the quick response! Any chance there's a version this works in at the moment?

Thanks for the fix! My understanding of the pairwise function is that it's pretty similar to `scran`'s `pairwiseTTests` and `pairwiseWilcox`. Is that right? I'm still getting a failure for the...

Thanks for making these changes! Just a couple more things: First, the summary method for the lazy pairwise z-test has similar issues to the pairwise rank test: ```python import diffxpy.api...

Most of them seem to be failing, here's the summary from running `pytest` at the root of the repo: ``` diffxpy/unit_test/test_acc_glm_all_numpy_temp.py F [ 1%] diffxpy/unit_test/test_backends.py .FF [ 5%] diffxpy/unit_test/test_constrained.py FFF...

I have frequently wished it were easier to compute differential expression between two arbitrary groups. This particularly comes up when dealing with multiple clusterings or independent labels (i.e. you've only...