ivargr

Hi! I am using `graphtyper genotype` with the `--vcf` flag to genotype a specific set of input variants. However, it seems that Graphtyper does not only genotype these variants, but...

I think this simple fix should solve issue #59.

Supporting other similarity measures than Jaccard

5

Hi! I think it would be nice if Bedtools supported other measures than the Jaccard index for measuring the similarity between two tracks (bed files), and I am interested in...

Bug / problem at end of chromosomes

3

Hi! I've spent some time debugging why sim3C seems to give too many read pairs where one read is at the end of a chromosome and the other at the...