Ivan Gregoretti

easy-cluster does not create expected FASTA and TSV

1

"MMseqs2 Version: 7e2840992948ee89dcc336522dc98a74fe0adf00" ## Expected Behavior mmseqs easy-cluster --help says that running this command mmseqs easy-cluster /opt/mmseqs/examples/DB.fasta result /tmp/mydir I should get two FASTAs and one .tsv. Quoting the help:...

Bug in Fragpipe 19.1 exposed by MSstats output file.

7

I am evaluating the accuracy of Fragpipe. Using Fragpipe 19.1 (MSFragger-3.7; IonQuant-1.8.10; philosopher_v4.8.0; Percolator 3.05), I run an LFQ analysis on publicly available data. I used files six files (...

Prefilter step died with easy-cluster

4

## Expected Behavior easy-cluster should finish execution without errors ## Current Behavior mmseqs easy-cluster errors and crashes with: Error: Prefilter step died Error: Search died ## Steps to Reproduce (for...

Error after not finding pre-training models (ir.dill)

3

Hello everyone. I just installed the latest cello-classify version with pip. Version 2.0.3. Installation went fine. When I try to use it, I get an error. I execute this cell...