Ivan Aksamentov

Results 131 issues of Ivan Aksamentov

For testing of https://github.com/nextstrain/nextclade/pull/1454 DO NOT MERGE

Rather than using a timestamp in changelog headings, e.g. `2024-02-16T04:00:32Z`, let's use version tag, which is a safe representation of a timestamp, e.g. `2024-02-16--04-00-32Z`. Side-by-side for comparison: ``` 2024-02-16T04:00:32Z 2024-02-16--04-00-32Z...

Add optional images to datasets. Sibling PR in software: https://github.com/nextstrain/nextclade/pull/1262 The image.png or image.json file can be added to dataset directory along with the `Image` field in `pathogen.json`: ```json "image":...

Back in the day, when datasets description objects were very small, I decided (lazily) to store in the local storage the dataset object as-is, as it comes from the index.json....

t:bug

Reported by @tsibley [here](https://github.com/nextstrain/nextclade/pull/1455#issuecomment-2140691617) > For me, the "Suggest automatically" feature of Nextclade was enabled by default (though it seems like a sticky preference?). With it enabled: > > 1....

t:bug

Reported by @tsibley [here](https://github.com/nextstrain/nextclade/pull/1455#issuecomment-2140691617) > External datasets like this are tagged "community", e.g. > > ![image](https://github.com/nextstrain/nextclade/assets/79913/c808d898-9c33-45b4-901d-5b19d8a3f051) > > and while _I_ get why this is, it feels potentially pretty confusing...

t:feat

We want to add clickable links into mutation tooltips. These links would lead to the corresponding mutation view in nextstrain.org/ncov colored by the mutated nucleotide. For example, the mutations at...

t:feat
good first issue
help wanted

Currently exported results only contain an array of results themselves. For better reproducibility and tracking it would be nice to save not only results themselves, but also input parameters used...

t:feat
prio:high