Ivan Aksamentov

@victorlin If I chose among the 3 options, I'd say 3 is the easiest. But I find it strange that the job from docker-base is running as a step in...

@victorlin I see. My worry is that CLI workflow file is already quite long. And both bioconda and docker-rebuild jobs are of much lesser importance and don't deal with build...

Closing this because Nextclade has been reimplemented in Rust, which does not have exceptions, so this no longer applies.

Implemented in https://github.com/nextstrain/nextclade/pull/859, https://github.com/nextstrain/nextclade/pull/1082

[Nextclade](https://anaconda.org/bioconda/nextclade) and [Nextalign](https://anaconda.org/bioconda/nextalign) are now semi-automatically [released on bioconda](https://github.com/nextstrain/nextclade/blob/51f91108ac7cdd9e367d5c794af85d349703d4e2/.github/workflows/bioconda.yml#L1) (they still require manual approval for PRs). This is additional to the main venues: [GitHub Releases](https://github.com/nextstrain/nextclade/releases) and [Docker](https://hub.docker.com/r/nextstrain/nextclade), as described in...

The system with cherry-picked renamed env vars is needlessly complex, broken and cannot keep up with upstream updates. Env vars should be passed as is. Half of the code in...

This is still a problem and RustRover inherited it. Where and how should I report it?

> One question that came up in yesterday's Nextstrain office hours is how to provide the name of Nextclade dataset when using the dataset-url param for custom datasets Whoa! This...

Nextclade v3 release should have mostly solved this. We now have a dataset creator guide and community datasets. The new pathogen.json file stores dataset name in a unified manner, and...

These are the ones you've pasted into the "Text" tab, right? So the "pasted" is correct and "sequences" is wrong. Can you propose a correct text universal for all fields?