Ivan Aksamentov

I've been contemplating persistence for a while. The problems in persistence I see are: - amount of data, especially if we persist sequence data and the tree - if we...

The supported formats are listed in the help. How do I check for unsupported formats? They are unsupported for a reason - the set of unsupported formats is unknown. How...

> It just felt a bit blackboxy to not know for sure whether compression works or not. Most users will learn about compression from the help text, because it's the...

I just wanted to add to Richard's answer that there is no way around of the current behavior with any configuration options. Frame shift detection and translation happen before QC...

Related https://github.com/nextstrain/nextclade/issues/113

This feature was often requested https://github.com/nextstrain/nextclade/issues/211 since the very beginning of Nextclade. Some time ago I already considered how to implement it and git a prototype https://github.com/nextstrain/nextclade/pull/282. To make it...

@cjw85 Thanks! Further we could use [selectors](https://docs.conda.io/projects/conda-build/en/latest/resources/define-metadata.html#preprocessing-selectors) to download files for different platforms (in conda terms that will be `linux64`, `osx` and `arm64`) and to use [destination directory and filename](https://docs.conda.io/projects/conda-build/en/latest/resources/define-metadata.html#destination-path)...

I tried to improve it a little in https://github.com/nextstrain/nextclade/pull/713, so that at least one could distinguish single mutations at the positions near 1. I am not sure more padding would...

This likely happens because the new workers are much faster and in v2 the main thread gets overloaded by the incoming analysis results earlier than in v1. Web platform has...

Hi Eric @EricFournier3, Sorry, Nextclade does not have the proxy networking functionality and it seems to be out of scope of the project. You should bring that up with your...