ismailelshimy

Differential gene co-expression analysis using scLink

2

Dear @Vivianstats , Could you kindly explain briefly how scLink can be used to perform differential co-expression analysis between case and control samples similar to what you performed using the...

Specifying contrasts in MUSCAT mixed models

6

Dear MUSCAT team, @HelenaLC @plger I hope my message finds you all fine. I have a small question for you: I would like to test the difference in gene expression...

MUSCAT Mixed Effects Models and the Cellular Detection Rate

2

Hello MUSCAT people, I hope my message finds you fine. I have an inquiry regarding the mixed-effects models implemented using mmDS function in MUSCAT. As I understood from your paper...

Hello, In the package vignette, it is written that _"The nuclear fraction score returned by nuclear_fraction_tags for a Cell Ranger BAM file would be E/(E+N) for each provided cell barcode."_...