Sam Isaacson
Sam Isaacson
Two `Reaction`s with the same substrates and products and such can hash differently if there is an order difference between them in the species, products, or generated net stoichiometry (with...
Right now it appears that default values for parameters get ignored during `discretize`. Similarly, one currently has to pass a parameter mapping to `PDESystem` giving the parameter values, which is...
I know the focus currently is getting MTK 9 done, but it would be very helpful once it is released to put together a brief migration guide for people that...
It seems like a breaking change was made to how parameter tuples are handled in a recent release? In the last Catalyst release, 13.4.1, we had doc examples that relied...
A very large number of examples throughout the docs now error due to using `Symbol`s in ways that are no longer supported / work so we are going to have...
It seems like the only thing we are missing for compositional modeling to work smoothly is a notion of connections between systems, which here would really just mean aliasing that...
I've temporarily disabled the formatter. The CI failures mean upstream dependencies can't easily see if they are causing issues in Catalyst, and give the impression our tests are failing. Since...
For new users, it is easy to add lots of packages in the default scope and end up with out of date packages holding things back, see https://discourse.julialang.org/t/unable-to-reproduce-catalyst-jl-example/106099/15 We should...
To help new contributors, these should 1. Summarize where the various Catalyst components are located in the src/*.jl files. 2. Summarize what PRs should include, i.e. - tests - updating...
Doc builds are about to tip over 90 minutes with the many examples and external packages now being added. I think we should consider splitting the docs, or at least...