Sam Isaacson

Jump benchmarks

10

Resurrecting and updating https://github.com/SciML/SciMLBenchmarks.jl/pull/298

Ensure initial tstops are unique

4

As shown in https://github.com/SciML/DiffEqJump.jl/issues/239, a user might accidentally double include some `tstops` when using callbacks. Maybe it would make sense for `DiffEqBase.initialize!` to call `unique!` on the `tstops`?

Show how to use the various problem types and access the solutions (i.e. what the components correspond to). I'll take a pass on this soonish if no one else gets...

- [ ] Requires https://github.com/SciML/SciMLBase.jl/pull/72 - [ ] Needs a SciMLBase release and to then increment the SciMLBase version. - [ ] Can't test locally, so then needs tests to...

Inconsistent use of mathrm within equations

1

```julia using Catalyst, Latexify rn = @reaction_network begin hillr(P₃,α,K,n), ∅ --> m₁ hillr(P₁,α,K,n), ∅ --> m₂ hillr(P₂,α,K,n), ∅ --> m₃ (δ,γ), m₁ ↔ ∅ (δ,γ), m₂ ↔ ∅ (δ,γ), m₃...

We’re in the home stretch moving DEBio over to using MT and renaming to Catalyst. We’re currently putting updated docs together. I’m opening this since we’ll need to get the...

`SymEngine.Basic(:(K4*E))` appears to resolve as `exp(1)*K4`. I assume similar issues also arise for symbols like `I`. Is there a way to disable this behavior? For background, in DiffEqBiological we use...

Wrong sign in upwinding detection with particular coefficient form

1

See Discourse, feel free to close if this is not an error: https://discourse.julialang.org/t/stability-issue-with-methodoflines/84133/5

warning on 1.7 about vendor() is depreciated

1

On 1.7 rc1: ```julia ┌ Warning: `vendor()` is deprecated, use `BLAS.get_config()` and inspect the output instead │ caller = (::NonlinearSolve.DefaultLinSolve)(x::Vector{Float64}, A::Matrix{Float64}, b::Vector{Float64}, update_matrix::Bool; tol::Nothing, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) at...

In https://github.com/SciML/DiffEqJump.jl/pull/225 I couldn't consistently use the user-provided rng to JumpProblem as some places only have integrators as input (for example in callbacks). It would be nice to have a...