Sam Isaacson
Sam Isaacson
Discourse is suddenly overflowing with mention of packages that could be useful for steady-state / bifurcation analysis. We should look into creating interfaces to use them. [PseudoArcLengthContinuation.jl](https://github.com/rveltz/PseudoArcLengthContinuation.jl) [Bifurcations.jl](https://github.com/tkf/Bifurcations.jl) [HomotopyContinuation.jl](https://github.com/JuliaHomotopyContinuation/HomotopyContinuation.jl) I...
See https://discourse.julialang.org/t/reaction-rate-laws-of-chemical-reaction-networks/56049
Now that ModelingToolkit and `ReactionSystem`s support units, do we want to expand `@reaction_network` to allow users to input units for species and parameters too?
Follow up on whether the zero order reactions in https://github.com/SciML/Catalyst.jl/issues/378 were actually showing the right behavior with that arrow type.
We have lots of code examples throughout the docs now, so it would be good to set up tests to make sure they actually keep running and working rather than...
Logo?
This is minor, but with the name settled we should get a nice logo.
https://github.com/augustinas1/MomentClosure.jl points out we currently can't support a geometric distribution of produced reaction products. It would be good to get a nice interface for adding this to `Reaction`s. We could...
@paulflang I wanted to open an issue in Catalyst to track anything we can do to help with your SBML efforts. I looked at https://github.com/SciML/CellMLToolkit.jl/issues/15 and noticed you mentioned a...
Issues to consider - representing continuous domains and BCs - Unstructured vs structured grids for spatial domains and graph geometries - BCs - simply reusing one reaction network everywhere vs...
See https://discourse.julialang.org/t/proper-syntax-for-adding-reactions-to-a-reaction-network-using-addreaction-function-in-catalyst-jl/44804 Trying that example (with the parameters added at the end), when doing: ```julia @add_reactions coupled_switch begin gD*(Hsn(tBD,B,fBD,nBD)*Hsn(tCD,C,fCD,nCD)), ∅ → D end gD tBD fBD nBD tCD fCD nCD...