Sam Isaacson

Di you try importing via SBML using SBMLToolkit?

Got it. Unfortunately, I have never found documentation for the net file function block, which makes understanding how it is supposed to work a bit difficult. I'd like to add...

The generated ReactionSystem has u0 and p added as defaults via metadata. See the README. You shouldn’t need to pass them in.

Do you have an example that doesn’t currently work?

Could you upload the .net file it generates? That's what we'd want to be able to load here.

Thanks! This looks like we could probably support it in a fairly straightforward manner since the observables are never used in reactions or rate laws. The latter would be more...

Here is an example on how to index by the name of a variable (which should work for observables too) ```julia using Catalyst, OrdinaryDiffEq rn = @reaction_network begin α, S...

Can you share the .net file? We don’t fully support custom functions but I can take a look at what is going on. An alternative is to export the file...

Sorry, I haven't had a chance to look into this -- one of the issues is that I am unaware of any official Bionetgen documentation on how a function block...

No discussion. I think the idea was to allow graphs generated from a GUI in some way to be fed in to make `ReactionSystem`s.