spec2vec
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iomega
Word2Vec based similarity measure of mass spectrometry data.
Models exported from spec2vec 0.8.0 have this additional keyword in the model which is not expected when reading.
Hello! We noticed that your CITATION.cff had a small issue and fixed it - possibly by just updating `cffversion` to 1.2.0. In addition to the fix, this Pull Request automates...
Hi, Using two similarity functions to compute similarity scores between spectra of two files: 1. Spec2vec: scores = calculate_scores(ref_spectrums, query_spectrums, spec2vec_similarity) 2. CosineGreedy: scores = calculate_scores(references=spectrums1, queries=spectrums2, similarity_function=CosineGreedy()) However, I've...
Hi, After training spec2vec model and creating spec2vec_similarity function, I used calculate_scores to find the similarity of spectra pairs scores = calculate_scores(reference_documents, query_spectrums, spec2vec_similarity) However the size scores is too...
A new pylint 1.22.x release caused trouble (#68) with unclear exceptions so I had to change the requirements to
Upon: $ conda install --channel nlesc --channel bioconda --channel conda-forge spec2vec I get: Solving environment: failed CondaValueError: Malformed version string '~': invalid character(s). Did anyone of you see this before?...
Inspired by recent work we did on `MS2DeepScore` -> https://github.com/matchms/ms2deepscore/issues/23 --> Define a Spec2VecModel that contains the `Word2Vec` gensim model as well as a the parameters used to create the...