Ibrahim Numanagić

Implementation of "extern" functions in Kaleidoscope

1

Hi, I was trying to add support for "extern" functions from libc in Kaleidoscope (which come for free in C++ version of Kaleidoscope). However, for the following IR (trying to...

Set mode-only flags

6

Is it possible to pass custom flags for specific modes? For example, dune file below works for `dune build main.exe` but fails for `dune build main.exe.o` because `ocamlopt` does not...

Standard library TODO

12

Hi Jordan, let's start with the string library: https://docs.python.org/3/library/stdtypes.html#textseq You can avoid string.format part for now. Some functions (like `str.split`) are implemented in multiple places: for example, split on a...

`seq` and `Kmer` are impractical for everyday use

1

On top of my head: - [ ] When loading `seq` via `bio.FASTA`, comparisons often fail because `s'a' != s'A'` (and most FASTAs are soft-masked and thus contain loads of...

Merge final Jordan's work

- [x] setup.py on Linux should detect the correct ABI version of libcodonc.so and pass the proper flags to gcc (our default builds use CXX03 ABI, and almost all modern...

Quip crashes with segfault on the following file (with -a option): [ftp://ftp.sra.ebi.ac.uk/vol1/ERA242/ERA242167/bam/9827_2%2349.bam Similar thing happens with the reference file (as a side note, by default this reference contains M character...

Native Windows support

7

- [x] Get build to work witn MSYS2 & Clang - [ ] Fix LLVM issues - [ ] Make tests runnable - [ ] Fix executable generation - [...