infotmatician

Margin-[E::hts_open_format] Failed to open file .bam

1

Hi, Hope you are doing well. I am getting an error on the margin step of the pipeline. When I re-run it works. I am sure that my bam file...

Definition of oriantation region of breakpoints

1

Hi, Thank you for developed such a great tool. How can I specify variant direction using VISOR according to VCF4.2? I am a little bit confusued about HACk, when want...

Inconsistency:Insertion variants length different in the ALT column with sv len.

2

Hi, Hope you are doing well. For some records in insertion variants are inconsistent with their ALT column sequences between SV_LEN. As an example; `1 249239182 Sniffles2.INS.5B7ES0 N GCGTCGCCTCTCTCATGTCAGCGCCATGCGCCGCGCCTCTGCGCCTGGGCGCCGCGCGCCGTCGCCCCATGCTCATGCCAAGGCCACACATGCTTCTCTCTGCGCCTGCGCGCGCCGCGCCCTCTGCGCCTGGGCGCCGCGCGCCGCGCCCTCTGCGCCCCTGGGT 54...