ioannis nemparis

parameters for minimap2

1

Hello, I am running medaka_consensus -i toMount/alsoGoodDataDiv16.fastq -d toMount/small.fa -o experimentFolder -m r1041_e82_400bps_sup_g615 The first step in the pipeline I notice is minimap2 -I 16G -x map-ont -d /toMount/small.fa.map-ont.mmi /toMount/small.fa...

When running make (as described) I am getting: [ 28%] Built target sdsl [ 33%] Built target divsufsort [ 38%] Built target divsufsort64 [ 42%] Building CXX object CMakeFiles/ri-buildfasta.dir/ri-buildfasta.cpp.o In...