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                                            chunxu xue

New custom catabolism

Hi, Yes, DiTing will create a table containing the relative abundance of each KEGG Orthologs among the samples. You can search for your interested KEGG Orthologs. The result also contains...

if i hava a predicted table related KEGG genes, how could i calculate the gene family using scripts pathway.py? and then draw the cycle like "carbon_cycle_sketch.png"

Sorry，This version has no function to do this.

Hey, DiTing cannot do this. I know a tool METABOLIC can do this (AnantharamanLab/METABOLIC: A scalable high-throughput metabolic and biogeochemical functional trait profiler (github.com)). Enjoy it. 发件人: ***@***.***> 发送时间: 2022年12月13日...

Diting on MAGs

Another tool might be what you want (KEGG-decoder/KEGGDecoder at master ・ kangluyao/KEGG-decoder (github.com)). 发件人: ***@***.***> 发送时间: 2022年12月13日 8:35 收件人: ***@***.***> 抄送: chunxu ***@***.***>; ***@***.***> 主题: Re: [xuechunxu/DiTing] Diting on MAGs...

关于KEGG注释想使用KOBAS软件的问题

暂时没有这个选项从 Windows 版邮件发送发件人: ***@***.***> 发送时间: 2023年10月8日 10:28 收件人: ***@***.***> 抄送: ***@***.***> 主题: [xuechunxu/DiTing] 关于KEGG注释想使用KOBAS软件的问题 (Issue #31) 您好：请问如果想在KEGG注释这步不用kofamscan而换使用KOBAS我应该怎么做？ ― Reply to this email directly, view it on GitHub,...

chunxu xue

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New custom catabolism

if i hava a predicted table related KEGG genes, how could i calculate the gene family using scripts pathway.py? and then draw the cycle like "carbon_cycle_sketch.png"

Diting on MAGs

Diting on MAGs

关于KEGG注释想使用KOBAS软件的问题

heatmap generate error

Key error NODE

ERROR sequence/io/sequence_lib.cpp : 70 - PE library number of reads is odd: 49891647!'

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