William Gearty

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pkgstats does not install ctags or gtags properly on Windows

18

Just wanted to echo the issues that @schneiderpy was experiencing in #63 and #64. Upon installing and loading `pkgstats`, I also got this error: ``` Error: package or namespace load...

I'm getting the following warnings when using the "circular" and "fan" `layout`s: ``` r library(ggplot2) #> Warning: package 'ggplot2' was built under R version 4.5.2 library(ggtree) #> ggtree v4.1.1 Learn...

`aes_()` deprecation

2

The `aes_()` function has been deprecated in ggplot2 since version 3.0.0. Please remove uses of it from ggtree. See reprex below: ``` r library(ggplot2) library(ggtree) #> ggtree v3.14.0 Learn more...

Some of the links in this vignette are outdated: https://docs.ropensci.org/taxize/articles/datasources.html At the very least, the IUCN Red List API is now located here: https://api.iucnredlist.org/

Quarto integration/extension

6

An rphylopic user asked me at useR if there was a way to use rphylopic within the text of a Quarto document. I couldn't come up with a great solution...

Currently, `add_phylopic_tree()` only supports rectangular phylogenies (and all of the defaults assume a rightwards `direction`). It would be nice to be able to support circular trees and also have good...

This switches our HTTP calls from using `httr` to using `httpcache` so we can skip repeated API calls (and image downloads). Some quick benchmarking based on plotting the phylogeny with...

Use phylopics with igraph

2

This adds the ability to use phylopic silhouettes as vertices when plotting with igraph. The user must first activate the functionality using the `activate_igraph()` function, then they can use `vertex.shape...