William Gearty
William Gearty
I've been trying to reproduce the [Interrupted Goode homolosine example here](https://wilkelab.org/practicalgg/articles/goode.html). Everything seems to work fine, except that the map graticules (lat and long) don't extend to the limits like...
Looks like the phylopic API and website paths have changed and none of the phylopic functions in this package work anymore. See here for more details: http://api-docs.phylopic.org/v2/ Related: https://github.com/sckott/rphylopic/issues/23
This adds justification arguments/aesthetics to geom_phylopic, add_phylopic, and add_phylopic_base. They generally seem to work well, but there are some issues where the silhouette will over-justify due to interactions between the...
The sizes that we specify in `geom_phylopic` are in y-axis units, but we don't have access to the y-axis object when plotting the legend keys, so we have no idea...
This package was removed from CRAN back in February due to its dependence on the 'phylocomr' package. That package has since been fixed and restored on CRAN, but it looks...
I'm trying to run `revdep_check()` in a [github action](https://github.com/willgearty/deeptime/actions/runs/8380458327/job/22979390857), but I'm running into this error: > Error: Error: (converted from warning) unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.3: > cannot...
`ape` is only in Suggests, but it is called here: https://github.com/neurogenomics/orthogene/blob/bc242c50396018d55fd12e653c0c069bc34dca67/R/prepare_tree.R#L129-L130 This is ultimately called in one of the examples for `plot_orthogene()`: https://github.com/neurogenomics/orthogene/blob/bc242c50396018d55fd12e653c0c069bc34dca67/R/plot_orthotree.R#L54 If ape is not installed rcmdcheck then...
# Scope Computational paleontology (or paleobiology) is a thriving field. Gone are the days of just digging up fossils; paleontologists now have the luxury of being able to perform a...
In some cases (see "Leptotyphlops conjunctus"), the first result from `get_gbifid_` is a "HIGHERRANK" match, even when there are also exact matches. Currently the function doesn't filter out this match,...
The plot that is output by bin_space appears to have some dateline problems. Here is the output of the current documented example: ```r # Get internal data data("reefs") # Reduce...