single-cell-atac-seq topic
SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
swne
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
COSG
Accurate and fast cell marker gene identification with COSG
single-cell-papers-with-code
Papers with code for single cell related papers
SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
snATAC
<<------ Use SnapATAC!!
scarf
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
Muto_Wilson_NComm_2020
Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
Taiji
All-in-one analysis pipeline