phyloseq topic

microbiome R package

microbiome

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

ycl6

Fantaxtic - Nested Bar Plots for Phyloseq Data

gmteunisse

This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions for applying these colors to microbiome data.

KarstensLab

A comprehensive and customizable R package for microbiome analysis.

vallenderlab

Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.

shandley

A model-based visualization method for microbiome data

CenterForStatistics-UGent

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

cafferychen777