Thomas Ashhurst

Hi @davemcg , `Would it be possible to allow schex to take data frames / tibbles as input? I work with a lot of huge objects that I largely handle...

Hi @Tenrolf , that is a weird finding -- thanks for pointing it out! Especially the difference between run.flowsom and prep.cytonorm. Will have a dig around and see where the...

Ah yes, I think the label XY offset is a a whole number (like 1 or 2) so it is massively separated from the centroid if the range is

Hi @denvercal1234GitHub , we also have a workflow for 'multi-level' clustering (see Figure 4 here: https://onlinelibrary.wiley.com/doi/10.1002/cyto.a.24350). Essentially we do a first round of clustering to identify major groups of cells...

Hey @ramziabb, If you like, you can just convert the data.table at the end of your Spectre workflow into a SingleCellExperiment object and go straight into your CATALYST workflow. We...

Hey Nils!! Yes absolutely, we actually have that (and for Seurat etc) in draft format we just haven't had the chance to get it online. Get Outlook for Android ________________________________...

Hi Markus, We are actually working on a fix for this issue at the moment, so we will get back to you soon! In the meantime, you have the option...

@earbebarnes the `prep.cytonorm` issues should be fixed in the beta of `v1.2` which you can test out with the following install code. ``` if(!require('remotes')) {install.packages('remotes')} # Installs the package 'remotes'...

@JPGranizo I have had this artefact if I have mis-matched my samples and batches. Double check that your samples line up with the correct batches in both the reference and...

There seem to be a few issues online that relate to these error messages. Either something is wrong with the plot itself (so it can't plot properly) or there is...