Tomas Bencomo

Is there a way to extend the text on the 2nd page (without the sidebar) so that the text fits the width of the page? Without the gray bar the...

Works great, thanks!

I looked at the data frame returned by `pcaPlot(counts, ..., returnData=TRUE)` and the data doesn't seem to have any formatting problems: ``` PC1 PC2 group condition name sample1 -3.704292 1.6779008...

When you run the pipeline are you using both conda and singularity? After running some tests, it seems the error occurs when I run the pipeline with conda **and** singularity...

I posted about this issue on [StackOverflow](https://stackoverflow.com/questions/60401617/r-draws-plots-with-rectangles-instead-of-text) and adding `mscorefonts` to the `conda` environment fixes the issue and creates plots with normal text. I've added `mscorefonts` to `deseq2.yaml` on my...

Hi - not the cnvkit authors but I believe the note is only referring to targeted amplicon sequencing and not WGS data.

Hi Vito - thanks for bringing this up. Glad the pipeline may be helpful to others. I added the MIT license. Hope this helps! Feel free to make a new...

Also add ability to set PON

Hi @MarcinKosinski thanks for the response. Two questions: 1) The comment refers to multiple biomarkers to test. Doesn't this mean testing multiple variables simultaneously to evaluate if any of the...

Hi @kassambara, I think my confusion comes down to how maxstat and the log rank test are different. Maxstat's vignette explains maximally select rank statistics as: > The functional relationship...