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icon location Boston, MA icon location Bioinformatician working on cancer, single cell genomics and variant calling

Results 2 issues of Pretty

som.py script not working on examples

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Hi, I have installed hap.py as instructed and running on the example data set. it gives me below error python ~/softwares/hap.py-build/bin/som.py /uufs/chpc.utah.edu/common/home/u0944235/SPIKEinData/ClinVarInjection/BamBlasterFinal/clinvarToInjectB37_edited_included.vcf.gz ../0.001Var_Consensus.all.vcf.gz -f ~/BioApps2/HunterKeith/HSV1_GBM_IDT_Probes_B37Pad25bps.bed -o test File "/uufs/chpc.utah.edu/common/home/u0944235/softwares/hap.py-build/bin/som.py", line...

Array in 1-dimension erro

Hi, I am getting this error while adding a new column for MT genes. What is that I am doing wrong? ```py adata = sc.read_10x_h5(dir_path + 'filtered_feature_bc_matrix.h5') adata.var_names_make_unique() print(adata.X) print(adata.obs['sample'].value_counts())...

bug