Oskar Hickl
Oskar Hickl
We have metaG and metaT data from the same samples and would like to use the rnaSPAdes assembly as trusted-read input for the metaG assembly. I imagine it would substantially...
Thanks for the swift reply! > Those catplot_params are passed to seaborn.violinplot as far as I can see in the code. Are they having no effect whatsoever? The ones passed...
Thanks! I was a bit confused by this: ``` perplexity: float Similar to the perplexity parameter from van der Maaten (2008); sets the scale of the affinity kernel used to...
Thanks a lot for the detailed answer! Regarding the issue of having identical kmers with large partitions, but also wanting to create as few as possible to decrease run time,...
Sure. To which email should I send the link?
> > > > > > Кекст, представленный в выпуске [№ 77,](https://github.com/rgov/Thunderbolt3Unblocker/issues/77) хорошо работал для официальной версии релиза Ventura 13.0, но теперь, когда вышла версия 13.0.1, он вызывает панику, как...
Hey, I just finished a Bakta prototype that splits the assembly into chunks and runs CMSCAN, etc., on each chunk. While I saw a slight speedup with more cores on...
Id also be interested in knowing the reason for this.
Ok, thanks for the input! Maybe connected to this, I noticed that the GTDB v226 db possibly 'over' classifies a lot. As a quick sanity check i ran kraken2 v2.1.6...
Hi @martin-steinegger, Thank you for the quick reply! Following up on your suggestion, I have conducted further tests regarding the memory allocation. My initial attempts on standard batch nodes with...