Martin Morgan

``` > sessionInfo() R Under development (unstable) (2019-02-08 r76071) Platform: x86_64-apple-darwin17.7.0 (64-bit) Running under: macOS High Sierra 10.13.6 Matrix products: default BLAS: /Users/ma38727/bin/R-devel/lib/libRblas.dylib LAPACK: /Users/ma38727/bin/R-devel/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base...

It is related to #221 and to checks in https://github.com/BiocParallel, both of which have consequence in real-world applications (I think). The connections are still open because the finalizer hasn't run....

We'll stop using it, but it seems like its a bug in knitr anyway...

Probably a useful utility, although it sort of seems like one is patching an imperfect error message, with a better solution being a better error message? One thing about the...

Any thoughts @hpages on a home for this? I'm not sure, as Kasper notes, that BiocManager is the right place for it.

Adding my vote to this wish. An inefficient implementation for "first" is ``` x[] = sort.list(sort.list(x)) rowRanks(x) ```

Bioconductor has a 'release' and a 'devel' branch. Most people building Bioconductor packages here would likely be doing so against the 'devel' branch (new features) rather than release branch (bug...

When both release and devel Bioc are on release R, BiocInstaller defaults to release Bioc, so the developer needs some way to say 'no, use devel bioc'. On the other...

@lcolladotor http://bioconductor.org/about/release-announcements/ and https://bioconductor.org/config.yaml

A non-BiocParallel example that kills the server for me is ``` remoter> library(parallel) remoter> cl = makeForkCluster(2) remoter> stopCluster(cl) ``` I think it is from `parallel:::mcexit()`, which calls `_exit()`, which...