Matt Thompson

Trajectories have topologies dangling off of them and I bet they're kept in sync after slicing - `t_new.topology` is probably what you're after

I think you might be looking for `Trajectory.atom_slice`?

Do you know which MOL2 spec VMD uses? There are a few (something SYBYL, TRIPOS, and some number of others). I get confused all the time

MDTraj doesn't support loading LAMMPS data files, mostly because very few of its developers and users have experience with it. PRs are welcome - though I suspect it's not exactly...

Hi, if I understand this correctly, > Is there any possible to load a slice of trajectory on demand? It sounds like you're looking for [`mdtraj.iterload`](https://www.mdtraj.org/1.9.8.dev0/api/generated/mdtraj.iterload.html#mdtraj.iterload`) (click for its page...

I would have probably used this if I remembered: https://github.com/mdtraj/mdtraj/tree/1.9.5/devtools#wheels Remind me if I need to log in to a Linux box to make manylinux wheels, or can I do...

> Are you familiar with using Docker images as build environments? If not, I'd be happy to give you a tutorial. Yes, the missing bit in the chain of my...

Looks like the website is pointing to an old version of the docs; I don't think 1.9.7 docs have been built but I thought there were 1.9.6. docs floating around...

As a passing comment: there are many different MOL2 formats masquerading as the same thing, it looks like there are differences between what VMD wrote and what MDTraj expects/hopes for....

Any updates on this? I believe this would be useful for the community - this was invaluable to me years ago when I was getting started in scientific software and...