Mark Keller

Then move many of the issues here related to data structures into that repo.

### Notes Commands that can be used to generate an image pyramid: ```sh bfconvert -tilex 512 -tiley 512 -pyramid-resolutions 6 -pyramid-scale 2 -compression LZW ./raster_channels.tiff ./raster_channels.ome.tif ``` ----- 1) Combined...

Bfconvert and tiffcomment installation instructions https://docs.openmicroscopy.org/bio-formats/5.9.1/users/comlinetools/index.html

Can use https://github.com/vitessce/vitessce-python-tutorial/blob/main/examples/example_transcriptomics_obs_segmentations_bitmask.ipynb

Yeah the proprietary image data structures look like they may be tricky to work with. It looks like there are some conversion functions, (maybe you have already seen them): -...

Ah I see. Maybe when it is ambiguous about what to visualize, special parameters (like we have for AnnDataWrapper https://github.com/vitessce/vitessce-python/blob/44bb572/vitessce/wrappers.py#L319) could help?

cc @manzt as well - my question was inspired by a question Trevor was asked recently during a seminar

For more specifics about the use case, it looks something like this: Lab X has a lot of imaging data in a non-NGFF format, and their existing data analysis scripts...

Possible with playwright now

See https://github.com/PMBio/mudatasets