Jesse Bloom
Jesse Bloom
[sphinx-argparse](https://sphinx-argparse.readthedocs.io/en/stable/) allows extending the results of `argparse` directives [as described here](https://sphinx-argparse.readthedocs.io/en/stable/extend.html). But when using alabaster, any formatting (for instance, putting text **in bold**) is lost.
I love the new `notebook` rules for running Jupyter notebooks. However, sometimes I'd like the **notebook** itself to be the output of the rule. For instance, I may want to...
When I run a command like: pysradb metadata --detailed SRR11085797 the resulting output has inconsistent whitespace. In particular, the "header line" has tab delimiters between columns, but the subsequent data...
I don't really understand how the HTML rendering of `altair` plots work, but one thing that is annoying at least for my workflows is that even if I make an...
When I decorate a method with `methodtools.lru_cache` and then build sphinx documentation, the docstring shows as `` rather than the documentation for the method in its docstring. I think this...
Right now axes can only be sorted with up to 1000 elements (see [here](https://github.com/altair-viz/altair/issues/2663)). It would be useful for me to able to sort to more than that many elements....
Would you be able to provide a pre-built binary for Max OS X? Right now there is only one for Linux at https://github.com/matsen/pplacer/releases/tag/v1.1.alpha18
Addresses [this issue](https://github.com/sphinx-doc/alabaster/issues/208). Briefly, the GitHub banner has moved to the new URL https://github.blog/wp-content/uploads/2008/12/forkme_right_darkblue_121621.png This pull request updates `layout.html` to use this new URL rather than old one that no...
The `github_banner` option links to the following image: https://s3.amazonaws.com/github/ribbons/forkme_right_darkblue_121621.png However, no such image exists on S3 anymore, so no image shows up and the page looks wrong.
Starting in `snakemake` version 8, global workflow dependencies are allowed [as here](https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html). This code looks like this in the top-level `Snakefile`: ``` conda: "envs/global.yaml" ``` However, this raises an error...