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imagej
ImageJ2 programming examples
The tutorials still use 2.0.0-rc-71, but this is old. The latest as of this writing is 2.3.0. This is currently blocked by the fact that there is some version clash...
Might be simpler than the manually configured `http.proxyHost`/`http.proxyPort`/`https.proxyHost`/`https.proxyPort` combo we currently recommend. See also https://github.com/imagej/pyimagej/issues/121#issuecomment-1089409309
Not currently working in the jupyter notebooks. NB: Working in some areas for me but not others. More specifically, is working in tutorials and demos but not why jupyter.
Running ```jupyter nbconvert``` on all the notebooks and re-executing every line is a good way to check they are all valid and changes haven't broken them.
One reason we switched away from the SciJava Jupyter Kernel in favor of plain BeakerX Groovy is to avoid hardcoded dependency overlap between the notebook technology itself and the SciJava-component...
Unfortunately, Maven has a [serious bug in dependency resolution](https://stackoverflow.com/q/45041888/1207769) that is unlikely to ever be fixed. The gist is: projects extending pom-scijava will not notice the bug. But projects which...
The `WorkingWithModules` example would make more sense as a howto.
Here are some examples for the LoopBuilder, collected from PRs and JavaDoc. The position example depends on `imglib2-5.9.0`, so this PR has to wait until `pom-scijava` includes it. In the...
- [ ] How to loop over all images of a directory - [ ] How to convert image types - [ ] How to do maximum projection - [...
We have tutorials in several places throughout the SciJava GitHub organizations and on the ImageJ wiki. Our goal is to create a coherent, ordered set of tutorials, through which new...