youngleel

TIME OUT for import_intercell_network

6

Hi when I run import_intercell_network ,it always throw a time-out. I guess it is a problem of my network. So, can I imort these network in local? could you give...

Error in system2("too-many-cells", args = c(args, autoArgs), stdout = TRUE) : error in running command

1

hi, thanks for your execellent job! when i run your tutuial: res=TooManyCellsR::tooManyCells(mat = pbmc@assays$RNA@counts, args = c( "make-tree" , "--no-filter" , "--normalization", "NoneNorm" , "--draw-max-node-size", "40" , "--draw-max-leaf-node-size", "70" )...

Hi, Junjun, excellent work ! I have read [your document ](https://junjunlab.github.io/BioSeqUtils-manual/basic-visualization.html). When we plot the signal peaks of chip-seq data, how can we fit the shape of each peak's column...

Create a Shiny package for handling spatial transcriptomics data

1

Hi, Wonderful job! I have searched through many articles and am looking for a Shiny app that can handle spatial transcriptomics data in a similar manner to how [Shinycell](https://github.com/SGDDNB/ShinyCell#Overview) handles...