Gustav W Delius

This was by mistake pointing to the style guide.

The IFR can be estimated from the data

8

This issue is for information only. I want to share the observation that the infection fatality ratio, that is such a crucial input to the model and whose true value...

Add multiple files in a single commit

4

`repo_add_file()` can take a vector of file names and will add all those files to the repositories, however it creates a new commit for each file. Because each commit triggers...

Is this package still supported?

1

I am considering switching from using the shinyBS package to using bsplus because shinyBS is no longer in active development and bugs are not being fixed any more. But before...

Call `model.eval()` before generating?

1

I understand why we have to call `model.eval()` before calculating the average loss in `estimate_loss()`. But should we not similarly call `model.eval()` before we start generating from the model?

Lack of discussion of callback function in optimisation tutorial

2

At https://docs.sciml.ai/Overview/stable/getting_started/fit_simulation/#Step-4:-Solve-the-Optimization-Problem the tutorial says: "This step will look very similar to [the first optimization tutorial](https://docs.sciml.ai/Overview/stable/getting_started/first_optimization/#first_opt), except now we have a new cost function. Just like in that tutorial, we...

Should default values be stored in species_params?

6

Currently many of the automatically calculated defaults for parameters like `h`, `gamma`, `ks`, etc. are then stored in columns of the species_params slot. This has the disadvantage that they are...

Currently `matchGrowth()` simply rescales the search volume, the maximum consumption rate and the metabolic rate all by the same factor in order to achieve a growth rate that allows individuals...

Just like for `newMultispeciesParams()` this argument should allow the suppression of unwanted messages.

We already have an external mortality rate that can model mortality from sources that are not explicitly included in the model. We similarly need an external encounter rate for modelling...