Gustav W Delius

In commit https://github.com/sizespectrum/mizer/commit/399c2bdee07d0812f7f9234fe26f45bcacc5de75 I added a code comment at the top of 'rate_functions.R' to document the current zoo of calling signatures of the rate functions.

Ken, the paper you linked does not appear to mention Ecosim. Did you perhaps mean the following paper? Jacobsen, Nis S, Timothy E. Essington, and Ken H. Andersen. “Comparing Model...

Hi Finlay, so nice to hear from you. And do not retreat back into the shadows! :-) I agree with you that from the professional software engineering point of view,...

This is no longer pressing. The user has now been isolated from the `@` because mizer provides accessor and setter functions for all relevant slots. Extension writers will not have...

A good way to see that is to take a look at the plot at https://sizespectrum.org/mizer/articles/community_model.html#sec:comm_model_change_sigma that does not show the chaotic behaviour that is being described there.

I think that if `w_pp_cutoff` is provided to `setResource()` but `carrying_capacity` is not, and if the new cutoff is smaller than the previous cutoff, then the function should cut off...

Thanks @JamesRimmerEco . That would be a good idea. In practice, the abundance of fish actually stays non-zero all the way up to `w_repro_max` but the abundance can become totally...

Let's put the upper limit on the size axis to the size beyond which the abundance density is less than 1e-5 of the maximum density.