Devika Agarwal

Hi! we compared the adjusted counts results from Soupx if the soup profile was done with 1-100 UMIs or just 10-100 UMIs per cell and actually we dont see much...

Thanks for the replies @alexvpickering @k3yavi As we have very high Ambient RNA and Doublet rate, we find that some of our key cell type genes for different neurotransmitters and...

@rob-p that's awesome. Thanks for pointing this out! I shall try alevin-fry out.

Hi, sorry after navigating the cistarget website i found the link for the motif2TFS here: https://resources.aertslab.org/cistarget/motif2tf/ . However, i dont know how to diffferentiate the different files within each species,...

hi @cbravo93 Thank you for the quick reply! no inconvenience at all! i can see that the team is still finishing all the updates regarding documentation. So i will just...

Great! We will try it with unshared features then. Thanks for getting back to me . Best, Devika

hi @pati-ni does this mean, the weights branch now works on your harmony repo and i can test it out again as well?