davidaray
davidaray
> Hi, I'm on the same issue, have you got any methods to solve this ? > Thanks! > > Qiang I didn't get anything from the author but I...
For anyone interested, here is a workaround for plotting via psmc directly: This is the documentation and commands from the script I ran. If you're familiar with linux, you should...
> Thanks for the instructions on the combined bootstrap plot @davidaray ! > > Just one question - is the estimated effective population size (e.g. column C in your data...
Indeed, I just noticed that the last time I taught this class, I used 0.4.8. This time, the default installation was 0.5.0. The log files indicate a difference in the...
Please post when the new commit is made so I can try again. Thanks.
I'm comparing three assemblies. Two are haplotypes of the same individual. The third is a not very great assembly from our recent work on the Zoonomia project. Species = Craseonycteris...
I'm trying something else at the moment. I'll give that a try if it fails again.
Update. I'm comparing cTho_A.fa (reference) to cTho_B.fa (a second haplotype of the same individual) and CraTho.fa (a second individual and lower quality assembly. A and B are very high quality...
Yes! In previous runs, only one vcf (for CraTho) was being generated. A second one based on the revised cTho_B assembly has now appeared. I'm not sure if this is...
Nope.