Chris Fields

Results 194 comments of Chris Fields

Small note: in the 2.7.2 workflow we found a bug which skips Sentieon DNAscope and DNAseq when using manually recalibrated BAMs, which seems to be due to a difference in...

@thevinayrao that directory setup looks wrong (our modules are in the standard `lib` directory), maybe try: ``` export PERL5LIB=/home/vinay/softwares/ensembl_vep/bioperl/bioperl-live-master/lib:$PERL5LIB ``` You can test whether this is in your path by...

@jayoung we'll have a look and try to get some support in for the next release.

Link to problematic record: http://www.ncbi.nlm.nih.gov/nuccore/S81162

@AndyMenzies can you point to an example file throwing the error so this could be tested?

This looks like it won't be a blocker, though I am looking into adding the new `idtype` option. The unknown is how this will affect network tests.

The second option (using the LOCUS) may be easier to implement. Will have to see if this can be done prior to the next release or not.

[Another CPAN tester fail](http://www.cpantesters.org/cpan/report/45ff9758-5745-11e6-9b58-1a996d6a51e5), also using perl 5.8.9 but on Mac OS X