Chris Fields
Chris Fields
Small note: in the 2.7.2 workflow we found a bug which skips Sentieon DNAscope and DNAseq when using manually recalibrated BAMs, which seems to be due to a difference in...
@thevinayrao that directory setup looks wrong (our modules are in the standard `lib` directory), maybe try: ``` export PERL5LIB=/home/vinay/softwares/ensembl_vep/bioperl/bioperl-live-master/lib:$PERL5LIB ``` You can test whether this is in your path by...
@jayoung we'll have a look and try to get some support in for the next release.
Link to problematic record: http://www.ncbi.nlm.nih.gov/nuccore/S81162
@AndyMenzies can you point to an example file throwing the error so this could be tested?
This looks like it won't be a blocker, though I am looking into adding the new `idtype` option. The unknown is how this will affect network tests.
Related to #198
The second option (using the LOCUS) may be easier to implement. Will have to see if this can be done prior to the next release or not.
Not a blocker
[Another CPAN tester fail](http://www.cpantesters.org/cpan/report/45ff9758-5745-11e6-9b58-1a996d6a51e5), also using perl 5.8.9 but on Mac OS X