Chris Fields
Chris Fields
Seems like the logic is to die if the `File::Spec->catfile($self->{dirname}, $file)` call is performed; notably `$@` isn't checked. I'm guessing it's okay to return from inside an eval, but I...
We need to trace which versions of MAKER are being used in case this is an internal issue there, but my feeling is the problem is in BioPerl. The trace...
This has been whittled down to a simple logic issue with the below statement (and illustrates the problem w/ stringified overloading). ``` perl while (my $seq = $stream->next_seq) { $count++;...
@nerdstrike have any code or examples we can test around? This generally helps 'speed' things along.
Yep. I’ve seen all of those, including CTG. I’m sure you have as well ;-) On Feb 15, 2018, at 1:00 AM, Torsten Seemann wrote: NTG = maybe p=0.25 for...
Been a while but I think something from either Mycobacterium or Streptomyces. Not just bacteria http://www.jbc.org/content/285/7/4595.full http://genome.cshlp.org/content/28/1/25.full Curious about the incidence of CTG in bacteria with experimental confirmation. Citation?
Related to commit 8fe9c612c83d2de6ee8adf7113f7534f024dac33, though not caused by it.
See [this YouTube video](https://www.youtube.com/watch?v=O2_n6cBuFwE) for specifics.
@heikkil we're currently relying on travis for checking, though if the tests are skipped there we'll miss changes that affect them. These are passing for me, but it's using perl...
@heikkil to add to this, here is a run which shows a few warnings using `prove -w`: ``` 12:37 $ prove -w t/LocalDB/ t/LocalDB/BioDBGFF.t ...... False [] range "\w-" in...