Ariadna A. Terrades

icon location Barcelona icon location Biotechnology's degree. Msc in Omics Data Analysis. PhD Student at Hospital del Mar Research Institute. (MARData + GRIB)

Results 3 comments of Ariadna A. Terrades

Issue defining "universe" in enricher function

Hi, We have also faced with this problem. From our point of view, it would be correct to filter the genesets (gmt) to obtain those genes which are present also...

Can be tumor-only somatic variant calling performed using Strelka?

Hi @FriederikeHanssen , thanks for your quick reply. I've been using mainly the default parameters with GRCh38 genome version , here is the command run: > cd /DNA/Batch_01 > srun...

Can be tumor-only somatic variant calling performed using Strelka?

Hi! As you mention, I ended up having germline results instead of somatic ones. However, I decided to run strelka among other methods to perform tumor-only somatic variant calling because...