Andy Daykin issues

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                                            Andy Daykin

The MISSING_GENOTYPE_VALUE value of -1 can conflict with genotype values that are in a VCF (scalar vs. list)

When running a bq_to_vcf command on data that has list values for genotype, e.g. [-1, -1] the densify_variants._densify_variants method will create a VariantCall object that defaults to using the MISSING_GENOTYPE_VALUE,...

Adding a check in the less than method for the VariantCall class to ensure that in cases where there is a mix of arrays and scalar values that the comparison still works.

Adding a check in the less than method for the VariantCall class to ensure that in cases where there is a mix of arrays and scalar values that the comparison...