enrichplot

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Weird behaviour of goplot and emaplot function!!

2

Hi I was trying to use goplot() function on the output of enrich go object "ego". However, it's showing absurd behavior. As I press enter `?` symbol follows!!  This...

Rohit-Satyam

goplot not working with my data but works with tutorial

5

Using the tutorial on https://bioc.ism.ac.jp/packages/3.7/bioc/vignettes/enrichplot/inst/doc/enrichplot.html , I am able to generate object ego and generate a figure from goplot I then convert my gene names to ENTREZID and run enrichGO...

abbaslab

weight edge widths in emapplot

6

Is it possible to weight the edge widths in emapplot so the term similarity is clearly visible? For example, the edges in the default plot below all look the same,...

cstubben

Is it possible to change shape of cnetplot plot points?

1

I have a cnetplot and I am wondering if it is possible for me to do further categorising of genes in the plot by point shape? My cnetplot is of...

hlnicholls

treeplot update

1

看了一下例子，觉得既然是画cladogram，那么highlight的时候，如果align更好看，让@xiangpin 搞了，那么treeplot需要相应地更新，可以用这个参数。 ，至于compareCluster的支持，饼图在这里实在是鸡肋，可以保留这个功能，但默认不应该是这样的形式呈现，饼图大了overlap，小了没法看，就是能看的时候，辨识起来也不行。应该画一个heatmap或dotplot来表示归属，还可以用比如p.adjust，各自填充颜色等。

GuangchuangYu

关于barplot

2

在barplot代码中，为什么要使用df

zulinwu

Changing node text size with emapplot

2

Dear YuLab, I am trying to change the node text (something like geom_node_text) with the emapplot function of the enrichplot package. This is what I have unsuccessfully tried from an...

fmarchildon

cnetplot font change for category or gene only

2

Hi, I'm trying to use cnetplot to create networks of enricher results. For readability purposes, I would like to modify the category node/vertex labels separately from gene labels. Currently, the...

BioinformaNicks

Apologize if this is asked before, I tried to search but cannot find similar issue. Is there a way to convert the `p.adjust` in `enrichResult` to `-log10(p.adjust)`? I am trying...

olechnwin

The gseaplot function source code contains code (gseaplot.gseaResult) which hardcodes title font size: ``` p.pos

SergeMerzliakov