enrichplot
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YuLab-SMU
Visualization of Functional Enrichment Result
I am currently using enrichplot version 1.21.0. I am using emapplot to plot networks of gene ontology results that I have generated from enrichGO() and pairwise_termsim(). The plot generates fine,...
各位： 是否碰到过下面的问题？ 用Y叔的clusterProfiler包做好GSEA分析， enrichplot包里面的gseaplot2画图是发现， gseaplot2(egmt, geneSetID = 1, title = egmt$Description[1] ) 出的图很正常 加一个参数 gseaplot2(egmt, geneSetID = 1, title = egmt$Description[1], pvalue_table = T ) 不仅显示pvalue，还一起显示了信号通路的名字！ 求问这信号通路名怎么去掉啊？它挡住图了，挺碍事儿的。 头次网上求救， 救救孩子吧？
Hi, is there any way to automatically extract 1 term per cluster in the function of the TreePlot? e.g. the term that is the center of the cluster or the...
Hello, treeplot used to work fine for me (R v4.1) but now it is giving me this error. Could you help? ERROR while rich displaying an object: Error in `geom_segment2()`:...
For treeplot.compareClusterResult(), when i set clusterPanel = 'dotplot', dot and the tree overlap. And when i set clusterPanel = 'heatMap', the pic is perfect. So how to adjust the position...
According to the documentation the ```pvalue``` argument is the p-values of the genes. I guess this is a vector?? I tried ```GO_result@result$pvalue``` , where ```GO_result``` is the output of the...
As shown in this example (https://support.bioconductor.org/p/9145292/) also, I am getting the NA in my enriched gene after running the **enrichGO** function. Although I am using the customer annotation for GO...
Hi teacher: I use dotplot to visualize enrichResult objects, but it cannot use pvalue to filter. I found that in [res
Dear YuLab-SMU, thanks for the great tools for data visualization. I ran a pre-ranked GSEA search with MSigDB for Cancer Hallmarks using GSEA 4.3.2. Now I would like to use...
Hi! I'd like to color the dots plotted by the `emapplot()` function based on the q-value, so that the lower the q-value, the darker the dot will be. Is there...
