Volker Hilsenstein

Documentation/Tutorial: splitting clumped objects using distance transform and seeded watershed

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Splitting clumped objects after binarization/thresholding (e.g. touching cells or grains) using distance transform and seeded watershed is a very common operation when using tradiitonal (non-machine learning) segmentation. I just noticed...

Added AnnotatorJ. The link is in Readme.MD, additional info in this publication: https://www.biorxiv.org/content/10.1101/2020.02.27.968362v1.full.pdf

When using magicgui `PushButton` widgets in napari, the default styling of a disabled button is to not show the box around the button text. This essentially makes the widget look...

mouse wheel interaction problems

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Just reporting two issues I'm struggeling with, when interacting with the widget using the mouse wheel. 1. My Logitech mouse wheel has "click-stops". When zooming a volume rendering with itk,...

feature request: provide exisiting output array to `ndinterp.affine`

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With the recent activity around `ndinterp.affine` and many eyes on that functionality I will open an issue for the following feature request: It would be great if one could provide...

Polygon and other vector data

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Just adding an issue to keep track of the question I raised here: https://forum.image.sc/t/polygon-and-other-roi-annotations-in-ome-zarr/47990/9 According to the discussion above there does not seem to be a standard for storing polygon...

When pip-installing the requirements-windows.txt file, pip pulled keras version 2.2.2. With this version, the classify-unet module will throw an error as the interface to `keras.layers.merge` seems to have changed recently....

Stochastic optimization

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Hi, I've finally got some time to play with this on a GPU today. I have some issues with the stochastic optimization which you are already are aware of and...

While experimenting with `real_domain_fft` I noticed that this has different input shape requirements compared to `complex_domain_fft`. As a result, `pad_modes` in `['none', '2357']` will throw an error for some input...

windowing and type conversion possbile using `input_prep_fn`, `output_prep_fn` ?

7

Hi, I'm just trying to get into tensorflow to be able to modify flowdec to my needs. There are two things I am trying to achieve: 1. do input and...