Catalyst.jl
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SciML
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
This pull request changes the compat entry for the `BifurcationKit` package from `0.3` to `0.3, 0.4`. This keeps the compat entries for earlier versions. Note: I have not tested your...
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This pull request changes the compat entry for the `BifurcationKit` package from `0.3.4` to `0.3.4, 0.4` for package docs. This keeps the compat entries for earlier versions. Note: I have...
Many important dynamic properties of reaction networks depend on the choice of rate constants (complex/detailed balance, ACR, number/stability of equilibria, etc). I imagine there are situations where it would be...
Also does the "src/expression_utils.jl" file, as that primarily support the dsl file (the other relevant file is the chemistry one). Primarily four types of changes: - Added comment to code...
On a quick skim, it appears subsets of our DSL macro processing code overlap with MTK macro processing code. We should switch to MTK's code as much as possible to...
Code and tests for testing whether a reaction networks with a given set of rate parameters is detailed balanced.
Since SciMLBase now supports a Makie receipe we should add doc examples showing how to use it (and verifying it works similarly -- otherwise we should open issues on SciMLBase...
Given that MTK has changed behavior now and is promoting all tunables to a common type, the doc discussion of parameter typing needs to be checked and updated accordingly (or...
With https://github.com/SciML/Catalyst.jl/pull/1001 Latexify tests are broken again, and I am not able to get them working locally (somehow the string generation code just doesn't give tests that pass for me)....
https://discourse.julialang.org/t/compose-sdesystems-in-modelingtoolkit/117054/3 This would require us to accept noise representations internally too, or to use the Brownian feature of MTK (and hence convert to a general "System").