Catalyst.jl
Catalyst.jl copied to clipboard
SciML
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
update docs for programmatic modelling
List of updates to consider to the doc (which does not involve changing the actual pages. - [ ] Less generic name for "Model Simulation" section. List of alternatives: "Time...
As least one user would find it helpful: https://discourse.julialang.org/t/implement-matlab-simbiology-concepts-e-g-compartments-repeated-assignments-in-julia-catalyst/114266 Post v14 we should perhaps consider a CatalystStandardLibrary for adding such components for users.
This pull request changes the compat entry for the `OptimizationOptimJL` package from `0.1.14` to `0.1.14, 0.2` for package docs. This keeps the compat entries for earlier versions. Note: I have...
![github-actions[bot] avatar](https://avatars.githubusercontent.com/in/15368?v=4 "github-actions[bot] avatar"){kind=avatar}
This pull request changes the compat entry for the `OptimizationNLopt` package from `0.1.8` to `0.1.8, 0.2` for package docs. This keeps the compat entries for earlier versions. Note: I have...
This pull request sets the compat entry for the `DynamicPolynomials` package to `0.5`. This keeps the compat entries for earlier versions. Note: I have not tested your package with this...
At some point we should add this as `Reaction` metadata (but we'd also need to figure out how it would interact with setting it at the system level -- probably...
Lots of deprecation warnings in the V14 branch tests. These should be fixed before V14.
https://github.com/SciML/Catalyst.jl/actions/runs/9063058490/job/24898215803?pr=823#step:6:1804 This seems due to using `replace` from Symbolics, which is not exported and probably shouldn't be used. I have marked the relevant tests as broken for now. CC: @TorkelE