R. Axel W. Wiberg

Add documentation for reference databases (SMR >= v4.3)

11

Hi, I'm using `sortmerna` to "clean" some RNA-seq data that. I'm wondering about the "new" databases, i.e. those starting `smr_*`. The documentation is for `sortmerna` v 4.3.3 is not clear...

speeding up hmm-guided mode

14

Hi, I have been looking for ways to improve _de novo_ transcriptome assemblies from non-model species by using reference information from amino acid alignments (i.e. HMM profiles) of orthologous genes...

GVec error

14

Hi, I'm having some trouble running Stringtie2 (v2.1.4) to assemble mapped isoseq subreads. I first trim adapters. `lima subreads.bam adapters.fasta subreads.bam` Convert .bam to .fastq `samtools fastq -@ 30 -0...