LehmannN

Hello, did you find a solution ?

Hi Fanny, thanks for your quick reply. I am using the latest versions of scone (1.2.0), zinbwave (1.0.0), clusterExperiment (1.4.0) and Bioconductor (3.6). However I could not find the older...

Hi Fanny, In archive-zinbwave, I could only find version 0.1.4, 0.1.2, 0.1.1, 0.1.0 and 0.0.2. Is there another way of getting version 0.99.6.1 ? Thanks a lot

So now I tried with the packages : zinbwave 0.99.6.1 scone 1.1.3 (I could not find the 1.1.2 version) clusterExperiment 1.3.2 bioconductor 3.6 and I still get the same error...

Here are some results that may help : `> grepl("^W", colnames(colData(se)))` [1] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE...

Here are the results you asked for : ``` colData(se[, 1:2]) DataFrame with 2 rows and 19 columns Experiment Batch publishedClusters NREADS NALIGNED RALIGN TOTAL_DUP PRIMER PCT_RIBOSOMAL_BASES OEP01_N706_S501 K5ERRY_UI_96HPT Y01...

Hi @lucventurini, I aligned my Nanopore long-reads with [Minimap2](https://github.com/lh3/minimap2) and then used the Minimap2 output BAM file as input of Portcullis but I still didn't have time to analyse the...

Ok, thanks a lot for your feedback ! I will let know how it goes with DeSALT.