Error-fre

> There is one (probably not officially documented yet but it shows up in the help): > > ``` > -v VCFFILE, --vcf VCFFILE > Skip SNP step and provide...

There's only one bam file and one log file in the ./map folder. No .bai index file was generated.

I ran again using sample sheet to provide file input and got this in error file:  > slamdunk all > Running slamDunk map for 2 files (1 threads) >...

I tried to use a .csv file and I went through mapping and filtering then had the following error [MEF.csv](https://github.com/t-neumann/slamdunk/files/14142609/MEF.csv) > slamdunk all > Running slamDunk map for 2 files...

Sorry I replied late. I thought I figured it out but I have other problems. I originally used pip install. Then I tried to use conda to install it. Now...

I tried different sample sizes and input formats several times now. Even with the small sample size, I ran it successfully 2 times, but repeating the same process can also...

I tried some other solutions. Now I can separately run the command for 3 out of 4 of my big samples. Only one file could not be mapped properly and...

I finally got it running by using an interactive session on the server. I think it might still have something to do with allocating resources but I cannot know for...