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Published 20 hours ago • verified publisher icon immunogenomics

Open dataset of SCENT peaks?

Open gabrielcerono opened this issue 10 months ago • 1 comments

Hello everyone, great fan of this work! I have a question:

Is there any chance to get access to (already computed) a genome-wide scent peaks database? Does this dataset exist?

Bests,

Gabriel.

gabrielcerono avatar Apr 22 '24 21:04 gabrielcerono

Hi,

Same request here. In your paper, you said, "We constructed 23 enhancer–gene maps with a total of 87,648 peak–gene links (false discovery rate (FDR) <10%)".

Can you please upload these 87K links here?

Thanks, Yichao

YichaoOU avatar May 16 '24 16:05 YichaoOU

Hello Gabriel and Yichao,

Thank you for your interest in SCENT and so sorry for my delayed response! Now the linkages are available from the following dropbox link.

https://www.dropbox.com/scl/fo/g20tfnwkcuhib4a6z1wp4/ABYaK5s8bwTLnzrJ0KoZn48?rlkey=j1s5365gso53r2v2dsdynnsr2&st=5np1fq0a&dl=0

I hope this helps.

saorisakaue avatar May 28 '24 20:05 saorisakaue